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BICC1 BicC family RNA binding protein 1 [ Equus caballus (horse) ]

Gene ID: 100072191, updated on 17-Aug-2024

Summary

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Official Symbol
BICC1provided by VGNC
Official Full Name
BicC family RNA binding protein 1provided by VGNC
Primary source
VGNC:VGNC:15823
See related
Ensembl:ENSECAG00000013979
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See BICC1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 1 NC_009144.3 (48603998..48867307)

Chromosome 1 - NC_009144.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111773973 Neighboring gene transcription factor A, mitochondrial Neighboring gene uncharacterized LOC111773977 Neighboring gene phytanoyl-CoA 2-hydroxylase interacting protein like Neighboring gene family with sequence similarity 13 member C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009144.3 Chromosome 1 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein bicaudal C homolog 1
Names
bicaudal C homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009144.3 Reference EquCab3.0 Primary Assembly

    Range
    48603998..48867307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023643465.1 → XP_023499233.1  protein bicaudal C homolog 1 isoform X2

    UniProtKB/TrEMBL
    F6ZXP4
    Conserved Domains (4) summary
    cd09520
    Location:870 → 934
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    cd22420
    Location:46 → 126
    KH-I_BICC1_rpt1; first type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins
    cd22421
    Location:131 → 200
    KH-I_BICC1_rpt2; second type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins
    cd22422
    Location:284 → 349
    KH-I_BICC1_rpt3; third type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins

  2. XM_023643462.1 → XP_023499230.1  protein bicaudal C homolog 1 isoform X1

    UniProtKB/TrEMBL
    F6ZXP4
    Related
    ENSECAP00000068118.1, ENSECAT00000084460.1
    Conserved Domains (4) summary
    cd09520
    Location:871 → 935
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    cd22420
    Location:46 → 126
    KH-I_BICC1_rpt1; first type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins
    cd22421
    Location:131 → 200
    KH-I_BICC1_rpt2; second type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins
    cd22422
    Location:284 → 349
    KH-I_BICC1_rpt3; third type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins

  3. XM_023643471.1 → XP_023499239.1  protein bicaudal C homolog 1 isoform X3

    UniProtKB/TrEMBL
    F6ZXP4
    Related
    ENSECAP00000039898.1, ENSECAT00000035568.2
    Conserved Domains (4) summary
    cd09520
    Location:871 → 930
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    cd22420
    Location:46 → 126
    KH-I_BICC1_rpt1; first type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins
    cd22421
    Location:131 → 200
    KH-I_BICC1_rpt2; second type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins
    cd22422
    Location:284 → 349
    KH-I_BICC1_rpt3; third type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins

  4. XM_023643473.1 → XP_023499241.1  protein bicaudal C homolog 1 isoform X4

    UniProtKB/TrEMBL
    A0A9L0R4X3, A0A9L0RYU1
    Related
    ENSECAP00000067756.1, ENSECAT00000105381.1
    Conserved Domains (4) summary
    cd09520
    Location:791 → 855
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    cd22421
    Location:51 → 120
    KH-I_BICC1_rpt2; second type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins
    cd22422
    Location:204 → 269
    KH-I_BICC1_rpt3; third type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins
    cl00098
    Location:1 → 46
    KH-I; K homology (KH) RNA-binding domain, type I
Nucleotide Protein
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