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SDC1 syndecan 1 [ Equus caballus (horse) ]

Gene ID: 100071892, updated on 17-Aug-2024

Summary

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Official Symbol
SDC1provided by VGNC
Official Full Name
syndecan 1provided by VGNC
Primary source
VGNC:VGNC:22761
See related
Ensembl:ENSECAG00000014709
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See SDC1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 15 NC_009158.3 (76221975..76246401)

Chromosome 15 - NC_009158.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106781763 Neighboring gene pumilio RNA binding family member 2 Neighboring gene uncharacterized LOC102151020 Neighboring gene uncharacterized LOC111768144

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009158.3 Chromosome 15 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009158.3 Reference EquCab3.0 Primary Assembly

    Range
    76221975..76246401
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023619468.1 → XP_023475236.1  syndecan-1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2HG60
    Related
    ENSECAP00000032624.2, ENSECAT00000039597.3
    Conserved Domains (1) summary
    pfam01034
    Location:246 → 309
    Syndecan; Syndecan domain

  2. XM_023619466.1 → XP_023475234.1  syndecan-1 isoform X1

    UniProtKB/TrEMBL
    A0A9L0T4D7
    Related
    ENSECAP00000081964.1, ENSECAT00000147153.1
    Conserved Domains (1) summary
    pfam01034
    Location:265 → 328
    Syndecan; Syndecan domain

  3. XM_023619467.1 → XP_023475235.1  syndecan-1 isoform X2

    UniProtKB/TrEMBL
    A0A9L0RPZ2, A0A9L0STI5
    Related
    ENSECAP00000063784.1, ENSECAT00000130787.1
    Conserved Domains (1) summary
    pfam01034
    Location:294 → 357
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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