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RPL11 ribosomal protein L11 [ Equus caballus (horse) ]

Gene ID: 100071579, updated on 17-Aug-2024

Summary

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Official Symbol
RPL11provided by VGNC
Official Full Name
ribosomal protein L11provided by VGNC
Primary source
VGNC:VGNC:22521
See related
Ensembl:ENSECAG00000033631
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See RPL11 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 2 NC_009145.3 (31329808..31334153, complement)

Chromosome 2 - NC_009145.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106782784 Neighboring gene lysophospholipase 2 Neighboring gene PITH domain containing 1 Neighboring gene PITH domain-containing protein 1-like Neighboring gene elongin A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009145.3 Chromosome 2 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
large ribosomal subunit protein uL5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009145.3 Reference EquCab3.0 Primary Assembly

    Range
    31329808..31334153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001504217.6 → XP_001504267.1  large ribosomal subunit protein uL5 isoform X2

    See identical proteins and their annotated locations for XP_001504267.1

    UniProtKB/TrEMBL
    A0A3Q2GYF4
    Conserved Domains (1) summary
    PTZ00156
    Location:5 → 175
    PTZ00156; 60S ribosomal protein L11; Provisional

  2. XM_023635515.1 → XP_023491283.1  large ribosomal subunit protein uL5 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2GYF4
    Related
    ENSECAP00000026018.2, ENSECAT00000052605.2
    Conserved Domains (1) summary
    PTZ00156
    Location:7 → 177
    PTZ00156; 60S ribosomal protein L11; Provisional
Nucleotide Protein
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