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SMPDL3B sphingomyelin phosphodiesterase acid like 3B [ Equus caballus (horse) ]

Gene ID: 100070816, updated on 17-Aug-2024

Summary

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Official Symbol
SMPDL3Bprovided by VGNC
Official Full Name
sphingomyelin phosphodiesterase acid like 3Bprovided by VGNC
Primary source
VGNC:VGNC:23358
See related
Ensembl:ENSECAG00000000634
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See SMPDL3B in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 2 NC_009145.3 (28041160..28066575, complement)

Chromosome 2 - NC_009145.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111772121 Neighboring gene EYA transcriptional coactivator and phosphatase 3 Neighboring gene XK related 8 Neighboring gene replication protein A2 Neighboring gene thymocyte selection associated family member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009145.3 Chromosome 2 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009145.3 Reference EquCab3.0 Primary Assembly

    Range
    28041160..28066575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023635109.1 → XP_023490877.1  acid sphingomyelinase-like phosphodiesterase 3b isoform X2

    UniProtKB/TrEMBL
    A0A3Q2H9K1
    Conserved Domains (1) summary
    cd00842
    Location:23 → 323
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain

  2. XM_023635104.1 → XP_023490872.1  acid sphingomyelinase-like phosphodiesterase 3b isoform X2

    UniProtKB/TrEMBL
    A0A3Q2H9K1
    Related
    ENSECAP00000080629.1, ENSECAT00000144671.1
    Conserved Domains (1) summary
    cd00842
    Location:23 → 323
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain

  3. XM_023635116.1 → XP_023490884.1  acid sphingomyelinase-like phosphodiesterase 3b isoform X3

    Conserved Domains (1) summary
    cd00842
    Location:23 → 323
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain

  4. XM_005615183.3 → XP_005615240.2  acid sphingomyelinase-like phosphodiesterase 3b isoform X1

    UniProtKB/TrEMBL
    A0A3Q2H9K1
    Related
    ENSECAP00000030219.2, ENSECAT00000054590.3
    Conserved Domains (1) summary
    cd00842
    Location:23 → 323
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

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