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NAGPA N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase [ Equus caballus (horse) ]

Gene ID: 100069983, updated on 17-Aug-2024

Summary

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Official Symbol
NAGPAprovided by VGNC
Official Full Name
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidaseprovided by VGNC
Primary source
VGNC:VGNC:58576
See related
Ensembl:ENSECAG00000012180
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See NAGPA in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 13 NC_009156.3 (39279197..39287793)

Chromosome 13 - NC_009156.3Genomic Context describing neighboring genes Neighboring gene eukaryotic elongation factor 2 lysine methyltransferase Neighboring gene ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase Neighboring gene chromosome 13 C16orf89 homolog Neighboring gene SEC14 like lipid binding 5 Neighboring gene periplakin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009156.3 Chromosome 13 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in secretion of lysosomal enzymes IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009156.3 Reference EquCab3.0 Primary Assembly

    Range
    39279197..39287793
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023616361.1 → XP_023472129.1  N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase isoform X2

    Conserved Domains (1) summary
    pfam09992
    Location:130 → 305
    NAGPA; Phosphodiester glycosidase

  2. XM_023616360.1 → XP_023472128.1  N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase isoform X1

    UniProtKB/TrEMBL
    A0A9L0RI07, F6T6R9
    Related
    ENSECAP00000061291.1, ENSECAT00000083172.1
    Conserved Domains (2) summary
    cd00054
    Location:402 → 433
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam09992
    Location:130 → 305
    NAGPA; Phosphodiester glycosidase
Nucleotide Protein
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