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BEND6 BEN domain containing 6 [ Equus caballus (horse) ]

Gene ID: 100069928, updated on 17-Aug-2024

Summary

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Official Symbol
BEND6provided by VGNC
Official Full Name
BEN domain containing 6provided by VGNC
Primary source
VGNC:VGNC:15813
See related
Ensembl:ENSECAG00000008079
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See BEND6 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 20 NC_009163.3 (55090568..55145428)

Chromosome 20 - NC_009163.3Genomic Context describing neighboring genes Neighboring gene dystonin Neighboring gene uncharacterized LOC111769215 Neighboring gene nucleophosmin-like Neighboring gene 60S ribosomal protein L34 pseudogene Neighboring gene uncharacterized LOC106782269 Neighboring gene ras-related GTP-binding protein D pseudogene Neighboring gene KIAA1586

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009163.3 Chromosome 20 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BEN domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009163.3 Reference EquCab3.0 Primary Assembly

    Range
    55090568..55145428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023624313.1 → XP_023480081.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A9L0SGF1
    Conserved Domains (2) summary
    smart01025
    Location:190 → 271
    BEN; The BEN domain is found in diverse animal proteins
    NF033175
    Location:46 → 95
    fuso_auto_Nterm; autotransporter-associated N-terminal domain

  2. XM_023624315.1 → XP_023480083.1  BEN domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A5F5PH47
    Related
    ENSECAP00000047184.1, ENSECAT00000075988.2
    Conserved Domains (1) summary
    NF033175
    Location:46 → 101
    fuso_auto_Nterm; autotransporter-associated N-terminal domain

  3. XM_023624316.1 → XP_023480084.1  BEN domain-containing protein 6 isoform X3

    UniProtKB/TrEMBL
    F6VZW3
    Related
    ENSECAP00000006078.2, ENSECAT00000008157.3

  4. XM_023624314.1 → XP_023480082.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A9L0SGF1
    Conserved Domains (2) summary
    smart01025
    Location:190 → 271
    BEN; The BEN domain is found in diverse animal proteins
    NF033175
    Location:46 → 95
    fuso_auto_Nterm; autotransporter-associated N-terminal domain

  5. XM_001499638.4 → XP_001499688.1  BEN domain-containing protein 6 isoform X1

    See identical proteins and their annotated locations for XP_001499688.1

    UniProtKB/TrEMBL
    A0A9L0SGF1
    Related
    ENSECAP00000073946.1, ENSECAT00000115856.1
    Conserved Domains (2) summary
    smart01025
    Location:190 → 271
    BEN; The BEN domain is found in diverse animal proteins
    NF033175
    Location:46 → 95
    fuso_auto_Nterm; autotransporter-associated N-terminal domain

  6. XM_014734514.2 → XP_014590000.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A9L0SGF1
    Conserved Domains (2) summary
    smart01025
    Location:190 → 271
    BEN; The BEN domain is found in diverse animal proteins
    NF033175
    Location:46 → 95
    fuso_auto_Nterm; autotransporter-associated N-terminal domain

RNA

  1. XR_002802040.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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