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XXYLT1 xyloside xylosyltransferase 1 [ Equus caballus (horse) ]

Gene ID: 100069238, updated on 15-Aug-2024

Summary

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Gene symbol
XXYLT1
Gene description
xyloside xylosyltransferase 1
See related
Ensembl:ENSECAG00000015054
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See XXYLT1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 19 NC_009162.3 (34306491..34477760, complement)

Chromosome 19 - NC_009162.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111769068 Neighboring gene large 60S subunit nuclear export GTPase 1 Neighboring gene family with sequence similarity 43 member A Neighboring gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009162.3 Chromosome 19 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables xylosyl alpha-1,3-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloside xylosyltransferase 1
Names
uncharacterized protein C3orf21 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009162.3 Reference EquCab3.0 Primary Assembly

    Range
    34306491..34477760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023623530.1 → XP_023479298.1  xyloside xylosyltransferase 1

    UniProtKB/TrEMBL
    A0A5F5PEP6, F7CX15
    Related
    ENSECAP00000012660.2, ENSECAT00000015720.3
    Conserved Domains (1) summary
    cl11394
    Location:108 → 367
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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