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HS6ST1 heparan sulfate 6-O-sulfotransferase 1 [ Equus caballus (horse) ]

Gene ID: 100068973, updated on 17-Aug-2024

Summary

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Official Symbol
HS6ST1provided by VGNC
Official Full Name
heparan sulfate 6-O-sulfotransferase 1provided by VGNC
Primary source
VGNC:VGNC:58937
See related
Ensembl:ENSECAG00000001117
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See HS6ST1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 18 NC_009161.3 (2537257..2583370)

Chromosome 18 - NC_009161.3Genomic Context describing neighboring genes Neighboring gene syntenin-1 pseudogene Neighboring gene uncharacterized LOC111768950 Neighboring gene U6 spliceosomal RNA Neighboring gene UDP-glucose glycoprotein glucosyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009161.3 Chromosome 18 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009161.3 Reference EquCab3.0 Primary Assembly

    Range
    2537257..2583370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023622627.1 → XP_023478395.1  heparan-sulfate 6-O-sulfotransferase 1

    UniProtKB/TrEMBL
    A0A9L0S7D6, F7CA25
    Related
    ENSECAP00000000747.3, ENSECAT00000000923.4
    Conserved Domains (1) summary
    pfam03567
    Location:85 → 350
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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