U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

OTOA otoancorin [ Equus caballus (horse) ]

Gene ID: 100068851, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
OTOAprovided by VGNC
Official Full Name
otoancorinprovided by VGNC
Primary source
VGNC:VGNC:21079
See related
Ensembl:ENSECAG00000008085
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See OTOA in Genome Data Viewer
Location:
chromosome: 13
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 13 NC_009156.3 (25768868..25838393, complement)

Chromosome 13 - NC_009156.3Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 31 Neighboring gene heparan sulfate-glucosamine 3-sulfotransferase 2 Neighboring gene methyltransferase 9, His-X-His N1(pi)-histidine Neighboring gene immunoglobulin superfamily member 6 Neighboring gene transport and Golgi organization protein 1 homolog

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_009156.3 Chromosome 13 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
otoancorin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009156.3 Reference EquCab3.0 Primary Assembly

    Range
    25768868..25838393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014730057.2 → XP_014585543.2  otoancorin isoform X2

    UniProtKB/TrEMBL
    A0A3Q2HTJ4, A0A9L0SS61
    Related
    ENSECAP00000038561.1, ENSECAT00000053271.2

  2. XM_005598857.3 → XP_005598914.2  otoancorin isoform X1

    UniProtKB/TrEMBL
    A0A9L0SS61
    Related
    ENSECAP00000006549.3, ENSECAT00000008710.3

  3. XM_014730059.2 → XP_014585545.2  otoancorin isoform X3

  4. XM_014730061.2 → XP_014585547.2  otoancorin isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.