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GLT6D1 glycosyltransferase 6 domain containing 1 [ Equus caballus (horse) ]

Gene ID: 100068354, updated on 17-Aug-2024

Summary

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Official Symbol
GLT6D1provided by VGNC
Official Full Name
glycosyltransferase 6 domain containing 1provided by VGNC
Primary source
VGNC:VGNC:18393
See related
Ensembl:ENSECAG00000008592
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See GLT6D1 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 25 NC_009168.3 (38842796..38859081)

Chromosome 25 - NC_009168.3Genomic Context describing neighboring genes Neighboring gene P19 lipocalin Neighboring gene lipocalin 9 Neighboring gene minor allergen Can f 2 Neighboring gene beta-lactoglobulin I

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009168.3 Chromosome 25 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative glycosyltransferase 6 domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009168.3 Reference EquCab3.0 Primary Assembly

    Range
    38842796..38859081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023629375.1 → XP_023485143.1  putative glycosyltransferase 6 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A9L0SZE7, F6VWU9
    Conserved Domains (1) summary
    cl11394
    Location:102 → 365
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_001498210.6 → XP_001498260.5  putative glycosyltransferase 6 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2HG34, A0A9L0SZE7
    Related
    ENSECAP00000079366.1, ENSECAT00000139678.1
    Conserved Domains (1) summary
    cl11394
    Location:43 → 306
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_023629376.1 → XP_023485144.1  putative glycosyltransferase 6 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A9L0SZE7, F6VWU9
    Related
    ENSECAP00000028625.1, ENSECAT00000037688.3
    Conserved Domains (1) summary
    cl11394
    Location:102 → 365
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_023629377.1 → XP_023485145.1  putative glycosyltransferase 6 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2HG34, A0A9L0SZE7
    Related
    ENSECAP00000032221.1, ENSECAT00000064130.3
    Conserved Domains (1) summary
    cl11394
    Location:43 → 306
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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