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ZNF620 zinc finger protein 620 [ Equus caballus (horse) ]

Gene ID: 100067885, updated on 17-Aug-2024

Summary

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Official Symbol
ZNF620provided by VGNC
Official Full Name
zinc finger protein 620provided by VGNC
Primary source
VGNC:VGNC:112199
See related
Ensembl:ENSECAG00000033227
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human all
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Genomic context

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See ZNF620 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 16 NC_009159.3 (46722301..46737233, complement)

Chromosome 16 - NC_009159.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111768373 Neighboring gene uncharacterized LOC111768372 Neighboring gene zinc finger protein 621 Neighboring gene transmembrane protein 134-like Neighboring gene uncharacterized LOC111768374 Neighboring gene ribosomal protein L14 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009159.3 Chromosome 16 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 620

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009159.3 Reference EquCab3.0 Primary Assembly

    Range
    46722301..46737233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014731762.2 → XP_014587248.1  zinc finger protein 620

    Conserved Domains (4) summary
    smart00349
    Location:11 → 75
    KRAB; krueppel associated box
    COG5048
    Location:146 → 355
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:311 → 331
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:351 → 376
    zf-H2C2_2; Zinc-finger double domain

  2. XM_023620696.1 → XP_023476464.1  zinc finger protein 620

    Conserved Domains (4) summary
    smart00349
    Location:11 → 75
    KRAB; krueppel associated box
    COG5048
    Location:146 → 355
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:311 → 331
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:351 → 376
    zf-H2C2_2; Zinc-finger double domain

  3. XM_014731764.2 → XP_014587250.1  zinc finger protein 620

    Related
    ENSECAP00000012984.4, ENSECAT00000016097.4
    Conserved Domains (4) summary
    smart00349
    Location:11 → 75
    KRAB; krueppel associated box
    COG5048
    Location:146 → 355
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:311 → 331
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:351 → 376
    zf-H2C2_2; Zinc-finger double domain

  4. XM_014731763.2 → XP_014587249.1  zinc finger protein 620

    Conserved Domains (4) summary
    smart00349
    Location:11 → 75
    KRAB; krueppel associated box
    COG5048
    Location:146 → 355
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:311 → 331
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:351 → 376
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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