U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GGTA1 glycoprotein alpha-galactosyltransferase 1 (inactive) [ Equus caballus (horse) ]

Gene ID: 100067589, updated on 15-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
GGTA1
Gene description
glycoprotein alpha-galactosyltransferase 1 (inactive)
See related
Ensembl:ENSECAG00000022868
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See GGTA1 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 25 NC_009168.3 (25604158..25675829, complement)

Chromosome 25 - NC_009168.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102150413 Neighboring gene stomatin Neighboring gene N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 Neighboring gene uncharacterized LOC111770584 Neighboring gene DAB2 interacting protein Neighboring gene uncharacterized LOC106782563

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_009168.3 Chromosome 25 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase
Names
N-acetyllactosaminide alpha-1,3-galactosyltransferase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009168.3 Reference EquCab3.0 Primary Assembly

    Range
    25604158..25675829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023628789.1 → XP_023484557.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X2

    Conserved Domains (2) summary
    cl11394
    Location:266 → 490
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl26386
    Location:3 → 86
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  2. XM_023628788.1 → XP_023484556.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

    UniProtKB/TrEMBL
    F6UX61
    Related
    ENSECAP00000020410.2, ENSECAT00000024562.3
    Conserved Domains (2) summary
    pfam03414
    Location:253 → 536
    Glyco_transf_6; Glycosyltransferase family 6
    cl26386
    Location:3 → 86
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  3. XM_023628790.1 → XP_023484558.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A9L0RVU5
    Related
    ENSECAP00000065997.1, ENSECAT00000080575.1
    Conserved Domains (1) summary
    pfam03414
    Location:81 → 364
    Glyco_transf_6; Glycosyltransferase family 6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.