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APOC2 apolipoprotein C2 [ Equus caballus (horse) ]

Gene ID: 100065532, updated on 17-Aug-2024

Summary

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Official Symbol
APOC2provided by VGNC
Official Full Name
apolipoprotein C2provided by VGNC
Primary source
VGNC:VGNC:50994
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See APOC2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 10 NC_009153.3 (15788642..15790759)

Chromosome 10 - NC_009153.3Genomic Context describing neighboring genes Neighboring gene apolipoprotein C1 Neighboring gene apolipoprotein C4 Neighboring gene CLPTM1 regulator of GABA type A receptor forward trafficking Neighboring gene RELB proto-oncogene, NF-kB subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009153.3 Chromosome 10 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipoprotein lipase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chylomicron remnant clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in high-density lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of very-low-density lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of lipoprotein lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of phospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of phospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chylomicron IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intermediate-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of low-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spherical high-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of very-low-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apolipoprotein C-II

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009153.3 Reference EquCab3.0 Primary Assembly

    Range
    15788642..15790759
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001502376.4 → XP_001502426.1  apolipoprotein C-II

    See identical proteins and their annotated locations for XP_001502426.1

    UniProtKB/TrEMBL
    F7A1W7
    Conserved Domains (1) summary
    pfam05355
    Location:24 → 99
    Apo-CII; Apolipoprotein C-II
Nucleotide Protein
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