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GALNT12 polypeptide N-acetylgalactosaminyltransferase 12 [ Equus caballus (horse) ]

Gene ID: 100063861, updated on 17-Aug-2024

Summary

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Official Symbol
GALNT12provided by VGNC
Official Full Name
polypeptide N-acetylgalactosaminyltransferase 12provided by VGNC
Primary source
VGNC:VGNC:18225
See related
Ensembl:ENSECAG00000016546
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See GALNT12 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 25 NC_009168.3 (5631966..5667356)

Chromosome 25 - NC_009168.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111770689 Neighboring gene gamma-aminobutyric acid type B receptor subunit 2 Neighboring gene ankyrin repeat and sterile alpha motif domain containing 6 Neighboring gene collagen type XV alpha 1 chain Neighboring gene uncharacterized LOC111770690

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009168.3 Chromosome 25 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 12
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009168.3 Reference EquCab3.0 Primary Assembly

    Range
    5631966..5667356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023629737.1 → XP_023485505.1  polypeptide N-acetylgalactosaminyltransferase 12 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2KSR4, A0A9L0TJR5
    Related
    ENSECAP00000026891.1, ENSECAT00000035261.2
    Conserved Domains (2) summary
    cd02510
    Location:138 → 432
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:446 → 575
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  2. XM_023629738.1 → XP_023485506.1  polypeptide N-acetylgalactosaminyltransferase 12 isoform X2

    Conserved Domains (2) summary
    cd02510
    Location:37 → 331
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:345 → 474
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
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