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EXOSC4 exosome component 4 [ Equus caballus (horse) ]

Gene ID: 100063419, updated on 17-Aug-2024

Summary

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Official Symbol
EXOSC4provided by VGNC
Official Full Name
exosome component 4provided by VGNC
Primary source
VGNC:VGNC:17734
See related
Ensembl:ENSECAG00000013658
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See EXOSC4 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 9 NC_009152.3 (84857313..84859256)

Chromosome 9 - NC_009152.3Genomic Context describing neighboring genes Neighboring gene sphingomyelin phosphodiesterase 5 Neighboring gene 5-oxoprolinase, ATP-hydrolysing Neighboring gene uncharacterized LOC111775067 Neighboring gene uncharacterized LOC106781017 Neighboring gene glycosylphosphatidylinositol anchor attachment 1 Neighboring gene cytochrome c1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009152.3 Chromosome 9 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in poly(A)-dependent snoRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP41

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009152.3 Reference EquCab3.0 Primary Assembly

    Range
    84857313..84859256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001917014.4 → XP_001917049.1  exosome complex component RRP41 isoform X1

    See identical proteins and their annotated locations for XP_001917049.1

    UniProtKB/TrEMBL
    F6ZU96
    Related
    ENSECAP00000011336.2, ENSECAT00000014202.4
    Conserved Domains (2) summary
    cd11370
    Location:11 → 237
    RNase_PH_RRP41; RRP41 subunit of eukaryotic exosome
    PRK03983
    Location:1 → 227
    PRK03983; exosome complex exonuclease Rrp41; Provisional

  2. XM_023649309.1 → XP_023505077.1  exosome complex component RRP41 isoform X2

    Conserved Domains (1) summary
    cd11370
    Location:14 → 191
    RNase_PH_RRP41; RRP41 subunit of eukaryotic exosome
Nucleotide Protein
Heading Accession and Version

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Research Materials