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CNOT2 CCR4-NOT transcription complex subunit 2 [ Equus caballus (horse) ]

Gene ID: 100062938, updated on 17-Aug-2024

Summary

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Official Symbol
CNOT2provided by VGNC
Official Full Name
CCR4-NOT transcription complex subunit 2provided by VGNC
Primary source
VGNC:VGNC:16676
See related
Ensembl:ENSECAG00000013864
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CNOT2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 6 NC_009149.3 (86110679..86222196)

Chromosome 6 - NC_009149.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106781245 Neighboring gene uncharacterized LOC102147644 Neighboring gene potassium calcium-activated channel subfamily M regulatory beta subunit 4 Neighboring gene protein tyrosine phosphatase receptor type B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009149.3 Chromosome 6 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of stem cell population maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009149.3 Reference EquCab3.0 Primary Assembly

    Range
    86110679..86222196
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023644003.1 → XP_023499771.1  CCR4-NOT transcription complex subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A9L0T3F7, H9GZY0
    Related
    ENSECAP00000011569.4, ENSECAT00000014467.4
    Conserved Domains (1) summary
    pfam04153
    Location:700 → 823
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  2. XM_023644004.1 → XP_023499772.1  CCR4-NOT transcription complex subunit 2 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2H759
    Related
    ENSECAP00000029740.3, ENSECAT00000054070.3
    Conserved Domains (1) summary
    pfam04153
    Location:387 → 510
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  3. XM_005613872.3 → XP_005613929.2  CCR4-NOT transcription complex subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2HUL0
    Related
    ENSECAP00000038986.3, ENSECAT00000065032.3
    Conserved Domains (1) summary
    pfam04153
    Location:392 → 515
    NOT2_3_5; NOT2 / NOT3 / NOT5 family
Nucleotide Protein
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