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TMTC4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Equus caballus (horse) ]

Gene ID: 100062494, updated on 17-Aug-2024

Summary

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Official Symbol
TMTC4provided by VGNC
Official Full Name
transmembrane O-mannosyltransferase targeting cadherins 4provided by VGNC
Primary source
VGNC:VGNC:24350
See related
Ensembl:ENSECAG00000006696
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See TMTC4 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 17 NC_009160.3 (69456813..69516389, complement)

Chromosome 17 - NC_009160.3Genomic Context describing neighboring genes Neighboring gene propionyl-CoA carboxylase subunit alpha Neighboring gene 39S ribosomal protein L47, mitochondrial pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene gamma-glutamylamine cyclotransferase Neighboring gene 40S ribosomal protein S26-like Neighboring gene sodium leak channel, non-selective Neighboring gene integrin subunit beta like 1 Neighboring gene uncharacterized LOC111768627

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009160.3 Chromosome 17 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC4
Names
transmembrane and TPR repeat-containing protein 4-like protein
transmembrane and tetratricopeptide repeat containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009160.3 Reference EquCab3.0 Primary Assembly

    Range
    69456813..69516389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005601323.3 → XP_005601380.1  protein O-mannosyl-transferase TMTC4 isoform X1

    See identical proteins and their annotated locations for XP_005601380.1

    UniProtKB/TrEMBL
    A0A3Q2KNS0, A0A9L0TG56
    Related
    ENSECAP00000080783.1, ENSECAT00000090814.1
    Conserved Domains (7) summary
    smart00028
    Location:583 → 616
    TPR; Tetratricopeptide repeats
    sd00006
    Location:481 → 509
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:549 → 582
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:481 → 514
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:291 → 365
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:480 → 546
    TPR_11; TPR repeat
    pfam13431
    Location:503 → 536
    TPR_17; Tetratricopeptide repeat

  2. XM_005601320.3 → XP_005601377.1  protein O-mannosyl-transferase TMTC4 isoform X1

    See identical proteins and their annotated locations for XP_005601377.1

    UniProtKB/TrEMBL
    A0A3Q2KNS0, A0A9L0TG56
    Related
    ENSECAP00000024815.2, ENSECAT00000059096.3
    Conserved Domains (7) summary
    smart00028
    Location:583 → 616
    TPR; Tetratricopeptide repeats
    sd00006
    Location:481 → 509
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:549 → 582
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:481 → 514
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:291 → 365
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:480 → 546
    TPR_11; TPR repeat
    pfam13431
    Location:503 → 536
    TPR_17; Tetratricopeptide repeat

  3. XM_014732185.2 → XP_014587671.1  protein O-mannosyl-transferase TMTC4 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2KNS0, A0A9L0TG56
    Conserved Domains (7) summary
    smart00028
    Location:583 → 616
    TPR; Tetratricopeptide repeats
    sd00006
    Location:481 → 509
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:549 → 582
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:481 → 514
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:291 → 365
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:480 → 546
    TPR_11; TPR repeat
    pfam13431
    Location:503 → 536
    TPR_17; Tetratricopeptide repeat

  4. XM_023621794.1 → XP_023477562.1  protein O-mannosyl-transferase TMTC4 isoform X2

    UniProtKB/TrEMBL
    A0A5F5PUE7
    Conserved Domains (3) summary
    sd00006
    Location:360 → 388
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:172 → 244
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:336 → 607
    TPR_11; TPR repeat

RNA

  1. XR_002801093.1 RNA Sequence

    Related
    ENSECAT00000007162.4
Nucleotide Protein
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