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C1D C1D nuclear receptor corepressor [ Equus caballus (horse) ]

Gene ID: 100061974, updated on 17-Aug-2024

Summary

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Official Symbol
C1Dprovided by VGNC
Official Full Name
C1D nuclear receptor corepressorprovided by VGNC
Primary source
VGNC:VGNC:15933
See related
Ensembl:ENSECAG00000002187
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See C1D in Genome Data Viewer
Location:
chromosome: 15
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 15 NC_009158.3 (35086806..35110597)

Chromosome 15 - NC_009158.3Genomic Context describing neighboring genes Neighboring gene dynein axonemal assembly factor 10 Neighboring gene uncharacterized LOC111768074 Neighboring gene uncharacterized LOC111768207 Neighboring gene uncharacterized LOC111768208

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009158.3 Chromosome 15 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear nucleic acid-binding protein C1D
Names
Nuclear nucleic acid-binding protein C1D-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009158.3 Reference EquCab3.0 Primary Assembly

    Range
    35086806..35110597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005599928.3 → XP_005599985.1  nuclear nucleic acid-binding protein C1D isoform X2

    See identical proteins and their annotated locations for XP_005599985.1

    UniProtKB/TrEMBL
    A0A9L0RPI1, F6VRU6, K9KCR3
    Related
    ENSECAP00000001496.3, ENSECAT00000002110.4
    Conserved Domains (1) summary
    pfam04000
    Location:18 → 96
    Sas10_Utp3; Sas10/Utp3/C1D family

  2. XM_001492549.4 → XP_001492599.2  nuclear nucleic acid-binding protein C1D isoform X1

    See identical proteins and their annotated locations for XP_001492599.2

    UniProtKB/TrEMBL
    A0A9L0R303, A0A9L0RPI1
    Related
    ENSECAP00000058454.1, ENSECAT00000115919.1
    Conserved Domains (1) summary
    pfam04000
    Location:31 → 108
    Sas10_Utp3; Sas10/Utp3/C1D family
Nucleotide Protein
Heading Accession and Version

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