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SGPP1 sphingosine-1-phosphate phosphatase 1 [ Equus caballus (horse) ]

Gene ID: 100061850, updated on 17-Aug-2024

Summary

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Official Symbol
SGPP1provided by VGNC
Official Full Name
sphingosine-1-phosphate phosphatase 1provided by VGNC
Primary source
VGNC:VGNC:58971
See related
Ensembl:ENSECAG00000013605
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See SGPP1 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 24 NC_009167.3 (10460897..10504670, complement)

Chromosome 24 - NC_009167.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102150814 Neighboring gene WD repeat domain 89 Neighboring gene uncharacterized LOC111770299 Neighboring gene uncharacterized LOC106782544 Neighboring gene spectrin repeat containing nuclear envelope protein 2 Neighboring gene probable UDP-sugar transporter protein SLC35A4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009167.3 Chromosome 24 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009167.3 Reference EquCab3.0 Primary Assembly

    Range
    10460897..10504670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023627877.1 → XP_023483645.1  sphingosine-1-phosphate phosphatase 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2IK97
    Related
    ENSECAP00000046008.1, ENSECAT00000035614.2
    Conserved Domains (1) summary
    cd03388
    Location:128 → 247
    PAP2_SPPase1; PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second ...

  2. XM_023627876.1 → XP_023483644.1  sphingosine-1-phosphate phosphatase 1 isoform X1

    UniProtKB/TrEMBL
    F7AFM7
    Related
    ENSECAP00000011282.2, ENSECAT00000014144.3
    Conserved Domains (1) summary
    cd03388
    Location:128 → 277
    PAP2_SPPase1; PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second ...
Nucleotide Protein
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