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MAN2C1 mannosidase alpha class 2C member 1 [ Equus caballus (horse) ]

Gene ID: 100061610, updated on 17-Aug-2024

Summary

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Official Symbol
MAN2C1provided by VGNC
Official Full Name
mannosidase alpha class 2C member 1provided by VGNC
Primary source
VGNC:VGNC:19912
See related
Ensembl:ENSECAG00000021864
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See MAN2C1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 1 NC_009144.3 (119706767..119719318)

Chromosome 1 - NC_009144.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111775722 Neighboring gene protein tyrosine phosphatase non-receptor type 9 Neighboring gene uncharacterized LOC111775293 Neighboring gene SIN3 transcription regulator family member A Neighboring gene nei like DNA glycosylase 1 Neighboring gene COMM domain containing 4 Neighboring gene taste receptor cell protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009144.3 Chromosome 1 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mannose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-mannosidase 2C1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009144.3 Reference EquCab3.0 Primary Assembly

    Range
    119706767..119719318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005602902.3 → XP_005602959.1  alpha-mannosidase 2C1 isoform X6

    UniProtKB/TrEMBL
    F6YTG8
    Conserved Domains (5) summary
    cd10813
    Location:254 → 505
    GH38N_AMII_Man2C1; N-terminal catalytic domain of mammalian cytosolic alpha-mannosidase Man2C1 and similar proteins; glycoside hydrolase family 38 (GH38)
    smart00872
    Location:520 → 598
    Alpha-mann_mid; Alpha mannosidase, middle domain
    COG0383
    Location:70 → 1054
    AMS1; Alpha-mannosidase [Carbohydrate transport and metabolism]
    pfam02837
    Location:62 → 150
    Glyco_hydro_2_N; Glycosyl hydrolases family 2, sugar binding domain
    pfam07748
    Location:624 → 1050
    Glyco_hydro_38C; Glycosyl hydrolases family 38 C-terminal domain

  2. XM_023653260.1 → XP_023509028.1  alpha-mannosidase 2C1 isoform X3

    UniProtKB/TrEMBL
    F6YTG8
    Conserved Domains (2) summary
    COG0383
    Location:70 → 1005
    AMS1; Alpha-mannosidase [Carbohydrate transport and metabolism]
    cl25404
    Location:254 → 473
    GH38-57_N_LamB_YdjC_SF; Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/YcsF family proteins, YdjC-family proteins, and similar proteins

  3. XM_023653250.1 → XP_023509018.1  alpha-mannosidase 2C1 isoform X2

    UniProtKB/TrEMBL
    F6YTG8
    Conserved Domains (2) summary
    COG0383
    Location:70 → 1030
    AMS1; Alpha-mannosidase [Carbohydrate transport and metabolism]
    cl25404
    Location:254 → 498
    GH38-57_N_LamB_YdjC_SF; Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/YcsF family proteins, YdjC-family proteins, and similar proteins

  4. XM_023653267.1 → XP_023509035.1  alpha-mannosidase 2C1 isoform X4

    UniProtKB/TrEMBL
    F6YTG8
    Conserved Domains (2) summary
    COG0383
    Location:70 → 1000
    AMS1; Alpha-mannosidase [Carbohydrate transport and metabolism]
    cl25404
    Location:254 → 468
    GH38-57_N_LamB_YdjC_SF; Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/YcsF family proteins, YdjC-family proteins, and similar proteins

  5. XM_001917552.5 → XP_001917587.2  alpha-mannosidase 2C1 isoform X1

    UniProtKB/TrEMBL
    F6YTG8
    Related
    ENSECAP00000019772.4, ENSECAT00000023838.4
    Conserved Domains (5) summary
    cd10813
    Location:254 → 505
    GH38N_AMII_Man2C1; N-terminal catalytic domain of mammalian cytosolic alpha-mannosidase Man2C1 and similar proteins; glycoside hydrolase family 38 (GH38)
    smart00872
    Location:520 → 598
    Alpha-mann_mid; Alpha mannosidase, middle domain
    COG0383
    Location:70 → 1037
    AMS1; Alpha-mannosidase [Carbohydrate transport and metabolism]
    pfam02837
    Location:62 → 150
    Glyco_hydro_2_N; Glycosyl hydrolases family 2, sugar binding domain
    pfam07748
    Location:624 → 1033
    Glyco_hydro_38C; Glycosyl hydrolases family 38 C-terminal domain

  6. XM_023653270.1 → XP_023509038.1  alpha-mannosidase 2C1 isoform X5

    UniProtKB/TrEMBL
    F6YTG8
    Conserved Domains (2) summary
    cd10813
    Location:111 → 362
    GH38N_AMII_Man2C1; N-terminal catalytic domain of mammalian cytosolic alpha-mannosidase Man2C1 and similar proteins; glycoside hydrolase family 38 (GH38)
    COG0383
    Location:112 → 894
    AMS1; Alpha-mannosidase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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