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CACYBP calcyclin binding protein [ Equus caballus (horse) ]

Gene ID: 100061486, updated on 17-Aug-2024

Summary

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Official Symbol
CACYBPprovided by VGNC
Official Full Name
calcyclin binding proteinprovided by VGNC
Primary source
VGNC:VGNC:15998
See related
Ensembl:ENSECAG00000004919
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CACYBP in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 5 NC_009148.3 (10460547..10470810)

Chromosome 5 - NC_009148.3Genomic Context describing neighboring genes Neighboring gene RAB GTPase activating protein 1 like Neighboring gene uncharacterized LOC111773448 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106783138 Neighboring gene mitochondrial ribosomal protein S14 Neighboring gene tenascin N

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009148.3 Chromosome 5 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S100 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tubulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcyclin-binding protein
Names
calcyclin-binding protein-like protein
calcyclin-binding-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009148.3 Reference EquCab3.0 Primary Assembly

    Range
    10460547..10470810
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023640582.1 → XP_023496350.1  calcyclin-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A9L0SIR0, F6SKX4
    Related
    ENSECAP00000073889.1, ENSECAT00000139644.1
    Conserved Domains (3) summary
    cd06468
    Location:77 → 169
    p23_CacyBP; p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter ...
    pfam09032
    Location:5 → 77
    Siah-Interact_N; Siah interacting protein, N terminal
    cl27091
    Location:184 → 219
    SGS; SGS domain

  2. XM_023640583.1 → XP_023496351.1  calcyclin-binding protein isoform X2

    UniProtKB/TrEMBL
    L7MRJ4
    Related
    ENSECAP00000003859.3, ENSECAT00000005480.4
    Conserved Domains (3) summary
    cd06468
    Location:32 → 124
    p23_CacyBP; p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter ...
    pfam05002
    Location:139 → 174
    SGS; SGS domain
    pfam09032
    Location:3 → 32
    Siah-Interact_N; Siah interacting protein, N terminal
Nucleotide Protein
Heading Accession and Version

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