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SGPP2 sphingosine-1-phosphate phosphatase 2 [ Equus caballus (horse) ]

Gene ID: 100060934, updated on 8-Mar-2024

Summary

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Official Symbol
SGPP2provided by VGNC
Official Full Name
sphingosine-1-phosphate phosphatase 2provided by VGNC
Primary source
VGNC:VGNC:22923
See related
Ensembl:ENSECAG00000022734
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See SGPP2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 6 NC_009149.3 (11295036..11417787)
102 previous assembly EquCab2.0 (GCF_000002305.2) 6 NC_009149.2 (11525863..11648599)

Chromosome 6 - NC_009149.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111773847 Neighboring gene paired box 3 Neighboring gene phenylalanyl-tRNA synthetase subunit beta Neighboring gene monoacylglycerol O-acyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate phosphatase 2
Names
sphingosine-1-phosphate phosphotase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009149.3 Reference EquCab3.0 Primary Assembly

    Range
    11295036..11417787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023642421.1 → XP_023498189.1  sphingosine-1-phosphate phosphatase 2 isoform X2

    UniProtKB/TrEMBL
    A0A9L0RG07
    Conserved Domains (1) summary
    cd03388
    Location:66 → 172
    PAP2_SPPase1; PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second ...

  2. XM_001493041.4 → XP_001493091.1  sphingosine-1-phosphate phosphatase 2 isoform X1

    UniProtKB/TrEMBL
    A0A9L0RG07, F6V665
    Related
    ENSECAP00000020191.2, ENSECAT00000024312.4
    Conserved Domains (2) summary
    COG0671
    Location:77 → 228
    PgpB; Membrane-associated phospholipid phosphatase [Lipid transport and metabolism]
    cd03388
    Location:76 → 225
    PAP2_SPPase1; PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second ...
Nucleotide Protein
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