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CRTAC1 cartilage acidic protein 1 [ Equus caballus (horse) ]

Gene ID: 100060874, updated on 17-Aug-2024

Summary

Official Symbol
CRTAC1provided by VGNC
Official Full Name
cartilage acidic protein 1provided by VGNC
Primary source
VGNC:VGNC:16875
See related
Ensembl:ENSECAG00000007097
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
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Genomic context

Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 1 NC_009144.3 (31521463..31662488)

Chromosome 1 - NC_009144.3Genomic Context describing neighboring genes Neighboring gene R3H domain and coiled-coil containing 1 like Neighboring gene uncharacterized LOC106782050 Neighboring gene lysyl oxidase like 4 Neighboring gene uncharacterized LOC106782058 Neighboring gene golgin A7 family member B Neighboring gene secreted frizzled related protein 5

Genomic regions, transcripts, and products

Genomic Sequence:
NC_009144.3 Chromosome 1 Reference EquCab3.0 Primary Assembly

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009144.3 Reference EquCab3.0 Primary Assembly

    Range
    31521463..31662488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001501238.6XP_001501288.2  cartilage acidic protein 1 isoform X1

    See identical proteins and their annotated locations for XP_001501288.2

    UniProtKB/TrEMBL
    A0A3Q2IE70
    Conserved Domains (3) summary
    pfam07593
    Location:460512
    UnbV_ASPIC; ASPIC and UnbV
    pfam07645
    Location:559605
    EGF_CA; Calcium-binding EGF domain
    pfam13517
    Location:299363
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
  2. XM_023641320.1XP_023497088.1  cartilage acidic protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2IE70, A0A9L0S6Z3
    Related
    ENSECAP00000070616.1, ENSECAT00000147526.1
    Conserved Domains (3) summary
    pfam07593
    Location:460512
    UnbV_ASPIC; ASPIC and UnbV
    pfam07645
    Location:559605
    EGF_CA; Calcium-binding EGF domain
    pfam13517
    Location:299363
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
  3. XM_005602321.3XP_005602378.1  cartilage acidic protein 1 isoform X3

    See identical proteins and their annotated locations for XP_005602378.1

    UniProtKB/TrEMBL
    A0A3Q2IE70, A0A5F5PGM1
    Related
    ENSECAP00000047618.2, ENSECAT00000071005.2
    Conserved Domains (3) summary
    pfam07593
    Location:460512
    UnbV_ASPIC; ASPIC and UnbV
    pfam07645
    Location:559605
    EGF_CA; Calcium-binding EGF domain
    pfam13517
    Location:299363
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
  4. XM_005602322.3XP_005602379.1  cartilage acidic protein 1 isoform X4

    See identical proteins and their annotated locations for XP_005602379.1

    UniProtKB/TrEMBL
    A0A3Q2IE70, A0A9L0SE29
    Related
    ENSECAP00000073104.1, ENSECAT00000126389.1
    Conserved Domains (3) summary
    pfam07593
    Location:460512
    UnbV_ASPIC; ASPIC and UnbV
    pfam07645
    Location:559605
    EGF_CA; Calcium-binding EGF domain
    pfam13517
    Location:299363
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella