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SELL selectin L [ Equus caballus (horse) ]

Gene ID: 100058663, updated on 8-Mar-2024

Summary

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Official Symbol
SELLprovided by VGNC
Official Full Name
selectin Lprovided by VGNC
Primary source
VGNC:VGNC:55185
See related
Ensembl:ENSECAG00000020122
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See SELL in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 5 NC_009148.3 (6111911..6137495, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 5 NC_009148.2 (6097076..6122528, complement)

Chromosome 5 - NC_009148.3Genomic Context describing neighboring genes Neighboring gene coagulation factor V Neighboring gene selectin P Neighboring gene uncharacterized LOC106783130 Neighboring gene prothymosin alpha-like Neighboring gene selectin E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oligosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sialic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte tethering or rolling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to cytokine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
L-selectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009148.3 Reference EquCab3.0 Primary Assembly

    Range
    6111911..6137495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005609644.3 → XP_005609701.1  L-selectin isoform X3

    UniProtKB/TrEMBL
    A0A3Q2HK18, A0A3Q2IEI5
    Related
    ENSECAP00000044182.2, ENSECAT00000045488.2
    Conserved Domains (2) summary
    cd00033
    Location:197 → 255
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd03592
    Location:39 → 157
    CLECT_selectins_like; C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels)

  2. XM_005609643.3 → XP_005609700.1  L-selectin isoform X2

    UniProtKB/TrEMBL
    A0A3Q2HK18
    Conserved Domains (2) summary
    cd00033
    Location:197 → 255
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd03592
    Location:39 → 157
    CLECT_selectins_like; C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels)

  3. XM_005609642.3 → XP_005609699.1  L-selectin isoform X1

    UniProtKB/TrEMBL
    A0A3Q2HK18, F7E0Z9
    Related
    ENSECAP00000017664.3, ENSECAT00000021448.4
    Conserved Domains (2) summary
    cd00033
    Location:197 → 255
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd03592
    Location:39 → 157
    CLECT_selectins_like; C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels)

  4. XM_023640518.1 → XP_023496286.1  L-selectin isoform X4

    UniProtKB/TrEMBL
    A0A3Q2HK18
    Conserved Domains (4) summary
    cd00033
    Location:150 → 208
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd00054
    Location:118 → 145
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl02432
    Location:1 → 110
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl27761
    Location:234 → 393
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

  5. XM_023640520.1 → XP_023496288.1  L-selectin isoform X5

    Conserved Domains (3) summary
    cd00033
    Location:68 → 126
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd00054
    Location:28 → 63
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl27761
    Location:152 → 311
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
Nucleotide Protein
Heading Accession and Version

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