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PES1 pescadillo ribosomal biogenesis factor 1 [ Equus caballus (horse) ]

Gene ID: 100058627, updated on 17-Aug-2024

Summary

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Official Symbol
PES1provided by VGNC
Official Full Name
pescadillo ribosomal biogenesis factor 1provided by VGNC
Primary source
VGNC:VGNC:21316
See related
Ensembl:ENSECAG00000002578
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See PES1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 8 NC_009151.3 (8658668..8673571)

Chromosome 8 - NC_009151.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111774606 Neighboring gene uncharacterized LOC111774605 Neighboring gene galactose-3-O-sulfotransferase 1 Neighboring gene putative SEC14-like protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009151.3 Chromosome 8 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PeBoW complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pescadillo homolog
Names
pescadillo homolog 1, containing BRCT domain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009151.3 Reference EquCab3.0 Primary Assembly

    Range
    8658668..8673571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001915756.4 → XP_001915791.1  pescadillo homolog

    UniProtKB/TrEMBL
    A0A9L0S0B3
    Related
    ENSECAP00000024811.2, ENSECAT00000064522.3
    Conserved Domains (3) summary
    COG5163
    Location:6 → 576
    NOP7; Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
    pfam06732
    Location:9 → 278
    Pescadillo_N; Pescadillo N-terminus
    pfam16589
    Location:327 → 413
    BRCT_2; BRCT domain, a BRCA1 C-terminus domain
Nucleotide Protein
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Molecular Biology Databases
Research Materials