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SEC23IP SEC23 interacting protein [ Equus caballus (horse) ]

Gene ID: 100058564, updated on 17-Aug-2024

Summary

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Official Symbol
SEC23IPprovided by VGNC
Official Full Name
SEC23 interacting proteinprovided by VGNC
Primary source
VGNC:VGNC:22791
See related
Ensembl:ENSECAG00000000536
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See SEC23IP in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 1 NC_009144.3 (12733149..12789854, complement)

Chromosome 1 - NC_009144.3Genomic Context describing neighboring genes Neighboring gene phospholipid phosphatase 4 Neighboring gene uncharacterized LOC111772936 Neighboring gene phosphatase and actin regulator 2-like Neighboring gene minichromosome maintenance complex binding protein Neighboring gene inositol polyphosphate-5-phosphatase F

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009144.3 Chromosome 1 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SEC23-interacting protein
Names
SEC23-interacting protein-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009144.3 Reference EquCab3.0 Primary Assembly

    Range
    12733149..12789854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023638289.1 → XP_023494057.1  SEC23-interacting protein isoform X4

    UniProtKB/TrEMBL
    A0A3Q2HJS5, A0A9L0S0G7
    Related
    ENSECAP00000067544.1, ENSECAT00000121197.1
    Conserved Domains (2) summary
    cd09584
    Location:600 → 668
    SAM_sec23ip; SAM domain of sec23ip
    pfam02862
    Location:746 → 952
    DDHD; DDHD domain

  2. XM_014733273.2 → XP_014588759.2  SEC23-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A3Q2HJS5
    Related
    ENSECAP00000000969.3, ENSECAT00000001244.3
    Conserved Domains (2) summary
    cd09584
    Location:642 → 710
    SAM_sec23ip; SAM domain of sec23ip
    pfam02862
    Location:788 → 993
    DDHD; DDHD domain

  3. XM_014733271.2 → XP_014588757.2  SEC23-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q2HJS5
    Related
    ENSECAP00000033468.2, ENSECAT00000051813.2
    Conserved Domains (2) summary
    cd09584
    Location:642 → 710
    SAM_sec23ip; SAM domain of sec23ip
    pfam02862
    Location:788 → 994
    DDHD; DDHD domain

  4. XM_023638287.1 → XP_023494055.1  SEC23-interacting protein isoform X3

    UniProtKB/TrEMBL
    A0A3Q2HJS5
    Conserved Domains (2) summary
    cd09584
    Location:602 → 670
    SAM_sec23ip; SAM domain of sec23ip
    pfam02862
    Location:748 → 954
    DDHD; DDHD domain
Nucleotide Protein
Heading Accession and Version

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