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LIN9 lin-9 DREAM MuvB core complex component [ Equus caballus (horse) ]

Gene ID: 100058310, updated on 17-Aug-2024

Summary

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Official Symbol
LIN9provided by VGNC
Official Full Name
lin-9 DREAM MuvB core complex componentprovided by VGNC
Primary source
VGNC:VGNC:58185
See related
Ensembl:ENSECAG00000014325
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See LIN9 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 30 NC_009173.3 (7560115..7654568)

Chromosome 30 - NC_009173.3Genomic Context describing neighboring genes Neighboring gene poly(ADP-ribose) polymerase 1 Neighboring gene isopentenyl-diphosphate Delta-isomerase 1 pseudogene Neighboring gene uncharacterized LOC111771288 Neighboring gene Mix paired-like homeobox Neighboring gene acyl-CoA binding domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009173.3 Chromosome 30 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription repressor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein lin-9 homolog
Names
lin-9 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009173.3 Reference EquCab3.0 Primary Assembly

    Range
    7560115..7654568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023632409.1 → XP_023488177.1  protein lin-9 homolog isoform X1

    UniProtKB/TrEMBL
    A0A9L0SCP9, A0A9L0SE15
    Related
    ENSECAP00000072622.1, ENSECAT00000080239.1
    Conserved Domains (1) summary
    pfam06584
    Location:143 → 247
    DIRP

  2. XM_023632412.1 → XP_023488180.1  protein lin-9 homolog isoform X3

    UniProtKB/TrEMBL
    A0A9L0ST66, F7DJP5
    Related
    ENSECAP00000077184.1, ENSECAT00000109860.1
    Conserved Domains (1) summary
    pfam06584
    Location:75 → 179
    DIRP

  3. XM_023632411.1 → XP_023488179.1  protein lin-9 homolog isoform X2

    UniProtKB/TrEMBL
    F7DJP5
    Conserved Domains (1) summary
    pfam06584
    Location:34 → 138
    DIRP
Nucleotide Protein
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