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CNOT6 CCR4-NOT transcription complex subunit 6 [ Equus caballus (horse) ]

Gene ID: 100057912, updated on 17-Aug-2024

Summary

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Official Symbol
CNOT6provided by VGNC
Official Full Name
CCR4-NOT transcription complex subunit 6provided by VGNC
Primary source
VGNC:VGNC:16678
See related
Ensembl:ENSECAG00000019325
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CNOT6 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 14 NC_009157.3 (1293910..1360262, complement)

Chromosome 14 - NC_009157.3Genomic Context describing neighboring genes Neighboring gene heat shock cognate 71 kDa protein pseudogene Neighboring gene fms related receptor tyrosine kinase 4 Neighboring gene U7 small nuclear RNA Neighboring gene glutamine-fructose-6-phosphate transaminase 2 Neighboring gene uncharacterized LOC111767707

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009157.3 Chromosome 14 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009157.3 Reference EquCab3.0 Primary Assembly

    Range
    1293910..1360262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023617004.1 → XP_023472772.1  CCR4-NOT transcription complex subunit 6 isoform X3

    UniProtKB/TrEMBL
    F7E2X9
    Related
    ENSECAP00000017032.3, ENSECAT00000020737.3
    Conserved Domains (3) summary
    COG4886
    Location:52 → 159
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:53 → 75
    LRR_1; leucine-rich repeat [structural motif]
    cl00490
    Location:191 → 487
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  2. XM_023617003.1 → XP_023472771.1  CCR4-NOT transcription complex subunit 6 isoform X2

    UniProtKB/TrEMBL
    A0A9L0S228
    Conserved Domains (3) summary
    cd10313
    Location:186 → 535
    Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
    COG4886
    Location:52 → 158
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:53 → 75
    LRR_1; leucine-rich repeat [structural motif]

  3. XM_023617002.1 → XP_023472770.1  CCR4-NOT transcription complex subunit 6 isoform X1

    UniProtKB/TrEMBL
    A0A9L0RXI4, A0A9L0S228
    Related
    ENSECAP00000068535.1, ENSECAT00000137497.1
    Conserved Domains (3) summary
    cd10313
    Location:191 → 540
    Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
    COG4886
    Location:52 → 159
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:53 → 75
    LRR_1; leucine-rich repeat [structural motif]

  4. XM_005599162.3 → XP_005599219.1  CCR4-NOT transcription complex subunit 6 isoform X1

    See identical proteins and their annotated locations for XP_005599219.1

    UniProtKB/TrEMBL
    A0A9L0RXI4, A0A9L0S228
    Conserved Domains (3) summary
    cd10313
    Location:191 → 540
    Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
    COG4886
    Location:52 → 159
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:53 → 75
    LRR_1; leucine-rich repeat [structural motif]

  5. XM_014730443.2 → XP_014585929.1  CCR4-NOT transcription complex subunit 6 isoform X1

    UniProtKB/TrEMBL
    A0A9L0RXI4, A0A9L0S228
    Conserved Domains (3) summary
    cd10313
    Location:191 → 540
    Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
    COG4886
    Location:52 → 159
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:53 → 75
    LRR_1; leucine-rich repeat [structural motif]

RNA

  1. XR_002799485.1 RNA Sequence

Nucleotide Protein
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