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TAF4 TATA-box binding protein associated factor 4 [ Equus caballus (horse) ]

Gene ID: 100057726, updated on 17-Aug-2024

Summary

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Official Symbol
TAF4provided by VGNC
Official Full Name
TATA-box binding protein associated factor 4provided by VGNC
Primary source
VGNC:VGNC:51619
See related
Ensembl:ENSECAG00000023048
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See TAF4 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 22 NC_009165.3 (48904462..48980114, complement)

Chromosome 22 - NC_009165.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111770049 Neighboring gene cadherin 4 Neighboring gene uncharacterized LOC111770050 Neighboring gene LSM family member 14B Neighboring gene proteasome 20S subunit alpha 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009165.3 Chromosome 22 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4
Names
TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009165.3 Reference EquCab3.0 Primary Assembly

    Range
    48904462..48980114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001490975.4 → XP_001491025.3  LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4

    UniProtKB/TrEMBL
    A0A9L0RJ52
    Related
    ENSECAP00000062831.1, ENSECAT00000121186.1
    Conserved Domains (3) summary
    pfam05236
    Location:797 → 1045
    TAF4; Transcription initiation factor TFIID component TAF4 family
    pfam07531
    Location:556 → 639
    TAFH; NHR1 homology to TAF
    cl26464
    Location:372 → 764
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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Research Materials