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ACSS1 acyl-CoA synthetase short chain family member 1 [ Equus caballus (horse) ]

Gene ID: 100057725, updated on 17-Aug-2024

Summary

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Official Symbol
ACSS1provided by VGNC
Official Full Name
acyl-CoA synthetase short chain family member 1provided by VGNC
Primary source
VGNC:VGNC:15009
See related
Ensembl:ENSECAG00000023870
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See ACSS1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 22 NC_009165.3 (771697..828344)

Chromosome 22 - NC_009165.3Genomic Context describing neighboring genes Neighboring gene PWWP domain-containing protein 2A-like Neighboring gene visual system homeobox 1-like Neighboring gene adipocyte plasma membrane associated protein Neighboring gene U6 spliceosomal RNA Neighboring gene cystatin F

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009165.3 Chromosome 22 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables AMP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables acetate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA biosynthetic process from acetate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetyl-coenzyme A synthetase 2-like, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009165.3 Reference EquCab3.0 Primary Assembly

    Range
    771697..828344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023625987.1 → XP_023481755.1  acetyl-coenzyme A synthetase 2-like, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A3Q2HNU4
    Conserved Domains (1) summary
    cl27677
    Location:53 → 618
    PRK07788; acyl-CoA synthetase; Validated

  2. XM_023625986.1 → XP_023481754.1  acetyl-coenzyme A synthetase 2-like, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A3Q2H8M8, A0A3Q2HNU4
    Related
    ENSECAP00000030295.1, ENSECAT00000054904.2
    Conserved Domains (1) summary
    cl27677
    Location:52 → 629
    PRK07788; acyl-CoA synthetase; Validated

  3. XM_005604714.3 → XP_005604771.2  acetyl-coenzyme A synthetase 2-like, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A3Q2GZH4, A0A3Q2HNU4
    Related
    ENSECAP00000026437.1, ENSECAT00000058846.2
    Conserved Domains (1) summary
    TIGR02188
    Location:52 → 675
    Ac_CoA_lig_AcsA; acetate--CoA ligase
Nucleotide Protein
Heading Accession and Version

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