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CHSY1 chondroitin sulfate synthase 1 [ Equus caballus (horse) ]

Gene ID: 100057477, updated on 17-Aug-2024

Summary

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Official Symbol
CHSY1provided by VGNC
Official Full Name
chondroitin sulfate synthase 1provided by VGNC
Primary source
VGNC:VGNC:51484
See related
Ensembl:ENSECAG00000010914
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CHSY1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 1 NC_009144.3 (107211942..107283576, complement)

Chromosome 1 - NC_009144.3Genomic Context describing neighboring genes Neighboring gene leucine rich repeat kinase 1 Neighboring gene uncharacterized LOC111775447 Neighboring gene uncharacterized LOC111775459 Neighboring gene uncharacterized LOC111775460 Neighboring gene selenoprotein S

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009144.3 Chromosome 1 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009144.3 Reference EquCab3.0 Primary Assembly

    Range
    107211942..107283576 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023651475.1 → XP_023507243.1  chondroitin sulfate synthase 1 isoform X1

    UniProtKB/TrEMBL
    F7DBA2
    Related
    ENSECAP00000008792.2, ENSECAT00000011271.3
    Conserved Domains (2) summary
    pfam05679
    Location:241 → 780
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:90 → 311
    Galactosyl_T; Galactosyltransferase

  2. XM_014733526.2 → XP_014589012.2  chondroitin sulfate synthase 1 isoform X2

    Conserved Domains (2) summary
    pfam05679
    Location:88 → 627
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:8 → 158
    Galactosyl_T; Galactosyltransferase

  3. XM_023651477.1 → XP_023507245.1  chondroitin sulfate synthase 1 isoform X2

    Conserved Domains (2) summary
    pfam05679
    Location:88 → 627
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:8 → 158
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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