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RRP1 ribosomal RNA processing 1 [ Equus caballus (horse) ]

Gene ID: 100057293, updated on 17-Aug-2024

Summary

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Official Symbol
RRP1provided by VGNC
Official Full Name
ribosomal RNA processing 1provided by VGNC
Primary source
VGNC:VGNC:22586
See related
Ensembl:ENSECAG00000015703
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See RRP1 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 26 NC_009169.3 (40349388..40391518)

Chromosome 26 - NC_009169.3Genomic Context describing neighboring genes Neighboring gene cystatin-B Neighboring gene cystatin-B Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 3 Neighboring gene uncharacterized LOC102150889 Neighboring gene trafficking protein particle complex subunit 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009169.3 Chromosome 26 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosomal RNA processing protein 1 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009169.3 Reference EquCab3.0 Primary Assembly

    Range
    40349388..40391518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014736410.2 → XP_014591896.1  ribosomal RNA processing protein 1 homolog A isoform X1

    UniProtKB/TrEMBL
    A0A3Q2HCH2, F6UDN9
    Related
    ENSECAP00000031903.3, ENSECAT00000042923.3
    Conserved Domains (1) summary
    pfam05997
    Location:11 → 219
    Nop52; Nucleolar protein,Nop52

  2. XM_014736411.2 → XP_014591897.1  ribosomal RNA processing protein 1 homolog A isoform X2

    UniProtKB/TrEMBL
    F6UDN9
    Conserved Domains (1) summary
    pfam05997
    Location:11 → 219
    Nop52; Nucleolar protein,Nop52

  3. XM_014736413.2 → XP_014591899.1  ribosomal RNA processing protein 1 homolog A isoform X4

    UniProtKB/TrEMBL
    A0A9L0TSA3, F6UDN9
    Related
    ENSECAP00000089258.1, ENSECAT00000099571.1
    Conserved Domains (1) summary
    pfam05997
    Location:11 → 219
    Nop52; Nucleolar protein,Nop52

  4. XM_001916663.4 → XP_001916698.2  ribosomal RNA processing protein 1 homolog A isoform X3

    UniProtKB/TrEMBL
    A0A9L0T8K1
    Related
    ENSECAP00000083473.1, ENSECAT00000105980.1
    Conserved Domains (1) summary
    pfam05997
    Location:11 → 219
    Nop52; Nucleolar protein,Nop52
Nucleotide Protein
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