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HEXD hexosaminidase D [ Equus caballus (horse) ]

Gene ID: 100056795, updated on 17-Aug-2024

Summary

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Official Symbol
HEXDprovided by VGNC
Official Full Name
hexosaminidase Dprovided by VGNC
Primary source
VGNC:VGNC:56433
See related
Ensembl:ENSECAG00000000366
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Also known as
HEXDC
Orthologs
human mouse all
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Genomic context

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See HEXD in Genome Data Viewer
Location:
chromosome: 11
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 11 NC_009154.3 (749153..776928, complement)

Chromosome 11 - NC_009154.3Genomic Context describing neighboring genes Neighboring gene nuclear prelamin A recognition factor Neighboring gene cytochrome b-245 chaperone 1 Neighboring gene 2-oxoglutarate and iron dependent oxygenase domain containing 3 Neighboring gene urotensin 2 receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009154.3 Chromosome 11 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosaminidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hexosaminidase D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009154.3 Reference EquCab3.0 Primary Assembly

    Range
    749153..776928 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001490394.6 → XP_001490444.3  hexosaminidase D isoform X2

    UniProtKB/TrEMBL
    A0A9L0RH98, F7CT58
    Related
    ENSECAP00000000398.1, ENSECAT00000000509.3
    Conserved Domains (1) summary
    cd06565
    Location:10 → 323
    GH20_GcnA-like; Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine ...

  2. XM_014735780.2 → XP_014591266.1  hexosaminidase D isoform X1

    UniProtKB/TrEMBL
    A0A9L0R535, A0A9L0RH98
    Related
    ENSECAP00000057574.1, ENSECAT00000113159.1
    Conserved Domains (1) summary
    cd06565
    Location:10 → 323
    GH20_GcnA-like; Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine ...
Nucleotide Protein
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