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CLEC16A C-type lectin domain containing 16A [ Equus caballus (horse) ]

Gene ID: 100056501, updated on 17-Aug-2024

Summary

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Official Symbol
CLEC16Aprovided by VGNC
Official Full Name
C-type lectin domain containing 16Aprovided by VGNC
Primary source
VGNC:VGNC:16599
See related
Ensembl:ENSECAG00000020814
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CLEC16A in Genome Data Viewer
Location:
chromosome: 13
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 13 NC_009156.3 (34441192..34641287, complement)

Chromosome 13 - NC_009156.3Genomic Context describing neighboring genes Neighboring gene transition protein 2 Neighboring gene suppressor of cytokine signaling 1 Neighboring gene uncharacterized LOC111767567 Neighboring gene Dexi homolog Neighboring gene class II major histocompatibility complex transactivator

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009156.3 Chromosome 13 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endolysosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CLEC16A
Names
C-type lectin domain family 16 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009156.3 Reference EquCab3.0 Primary Assembly

    Range
    34441192..34641287 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001490219.6 → XP_001490269.3  protein CLEC16A isoform X4

    UniProtKB/TrEMBL
    F6TYQ1
    Related
    ENSECAP00000018427.3, ENSECAT00000022309.3
    Conserved Domains (1) summary
    pfam09758
    Location:51 → 198
    FPL; uncharacterized conserved protein

  2. XM_005598915.3 → XP_005598972.1  protein CLEC16A isoform X2

    UniProtKB/TrEMBL
    F6TYT8
    Related
    ENSECAP00000018423.3, ENSECAT00000022305.4
    Conserved Domains (1) summary
    pfam09758
    Location:51 → 198
    FPL; uncharacterized conserved protein

  3. XM_023616319.1 → XP_023472087.1  protein CLEC16A isoform X5

    UniProtKB/TrEMBL
    A0A9L0TFX6
    Related
    ENSECAP00000087168.1, ENSECAT00000124154.1
    Conserved Domains (1) summary
    pfam09758
    Location:51 → 198
    FPL; Uncharacterized conserved protein

  4. XM_023616318.1 → XP_023472086.1  protein CLEC16A isoform X3

    UniProtKB/TrEMBL
    F6TYQ1
    Conserved Domains (2) summary
    pfam09758
    Location:51 → 198
    FPL; Uncharacterized conserved protein
    cl26447
    Location:239 → 434
    Nucleoporin_N; Nup133 N terminal like

  5. XM_023616317.1 → XP_023472085.1  protein CLEC16A isoform X1

    UniProtKB/TrEMBL
    A0A5F5PIT6, F6TYT8
    Related
    ENSECAP00000047769.1, ENSECAT00000076457.2
    Conserved Domains (1) summary
    pfam09758
    Location:51 → 198
    FPL; Uncharacterized conserved protein

  6. XM_023616321.1 → XP_023472089.1  protein CLEC16A isoform X7

    UniProtKB/TrEMBL
    A0A9L0RVR3, A0A9L0T6D9
    Related
    ENSECAP00000067905.1, ENSECAT00000144245.1
    Conserved Domains (1) summary
    pfam09758
    Location:51 → 198
    FPL; Uncharacterized conserved protein

  7. XM_023616320.1 → XP_023472088.1  protein CLEC16A isoform X6

    UniProtKB/TrEMBL
    A0A9L0T8Q3
    Related
    ENSECAP00000038144.2, ENSECAT00000040772.3
    Conserved Domains (1) summary
    pfam09758
    Location:51 → 198
    FPL; Uncharacterized conserved protein
Nucleotide Protein
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