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DCP1B decapping mRNA 1B [ Equus caballus (horse) ]

Gene ID: 100055722, updated on 17-Aug-2024

Summary

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Official Symbol
DCP1Bprovided by VGNC
Official Full Name
decapping mRNA 1Bprovided by VGNC
Primary source
VGNC:VGNC:56549
See related
Ensembl:ENSECAG00000018293
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See DCP1B in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 6 NC_009149.3 (29725570..29778617)

Chromosome 6 - NC_009149.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111773889 Neighboring gene calcium voltage-gated channel subunit alpha1 C Neighboring gene 40S ribosomal protein S12 pseudogene Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 4 Neighboring gene leucine rich repeats and transmembrane domains 2 Neighboring gene adiponectin receptor 2 Neighboring gene protein SDA1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009149.3 Chromosome 6 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enzyme activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mRNA-decapping enzyme 1B
Names
mRNA-decapping enzyme 1B-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009149.3 Reference EquCab3.0 Primary Assembly

    Range
    29725570..29778617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023642896.1 → XP_023498664.1  mRNA-decapping enzyme 1B isoform X1

    UniProtKB/TrEMBL
    A0A9L0SCC4
    Related
    ENSECAP00000015912.4, ENSECAT00000019441.4
    Conserved Domains (3) summary
    cd09804
    Location:16 → 131
    Dcp1; mRNA decapping enzyme 1 (Dcp1)
    pfam16741
    Location:570 → 611
    mRNA_decap_C; mRNA-decapping enzyme C-terminus
    cl27975
    Location:357 → 555
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

  2. XM_023642899.1 → XP_023498667.1  mRNA-decapping enzyme 1B isoform X3

    UniProtKB/TrEMBL
    A0A9L0SCC4
    Related
    ENSECAP00000043770.1, ENSECAT00000031895.2
    Conserved Domains (3) summary
    pfam16741
    Location:474 → 515
    mRNA_decap_C; mRNA-decapping enzyme C-terminus
    cl17171
    Location:3 → 35
    PH-like; Pleckstrin homology-like domain
    cl27975
    Location:261 → 459
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

  3. XM_023642898.1 → XP_023498666.1  mRNA-decapping enzyme 1B isoform X2

    UniProtKB/TrEMBL
    A0A3Q2I758, A0A3Q2LJM1
    Related
    ENSECAP00000041514.1, ENSECAT00000054205.2
    Conserved Domains (3) summary
    pfam16741
    Location:514 → 555
    mRNA_decap_C; mRNA-decapping enzyme C-terminus
    cl17171
    Location:52 → 75
    PH-like; Pleckstrin homology-like domain
    cl27975
    Location:301 → 499
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)
Nucleotide Protein
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