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NCDN neurochondrin [ Equus caballus (horse) ]

Gene ID: 100055370, updated on 17-Aug-2024

Summary

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Official Symbol
NCDNprovided by VGNC
Official Full Name
neurochondrinprovided by VGNC
Primary source
VGNC:VGNC:20584
See related
Ensembl:ENSECAG00000008891
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See NCDN in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 2 NC_009145.3 (21786773..21795461, complement)

Chromosome 2 - NC_009145.3Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit beta 2 Neighboring gene transcription factor AP-2 epsilon Neighboring gene KIAA0319 like Neighboring gene uncharacterized LOC102147570 Neighboring gene zinc finger protein 485-like Neighboring gene zinc finger MYM-type containing 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009145.3 Chromosome 2 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in neuron projection development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neuronal synaptic plasticity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neurochondrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009145.3 Reference EquCab3.0 Primary Assembly

    Range
    21786773..21795461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001503678.6 → XP_001503728.1  neurochondrin isoform X1

    UniProtKB/TrEMBL
    A0A3Q2HRX0, F6Q1Q6
    Related
    ENSECAP00000074339.1, ENSECAT00000109101.1
    Conserved Domains (1) summary
    pfam05536
    Location:30 → 637
    Neurochondrin; Neurochondrin

  2. XM_014737291.2 → XP_014592777.1  neurochondrin isoform X1

    UniProtKB/TrEMBL
    A0A3Q2HRX0, F6Q1Q6
    Related
    ENSECAP00000006985.1, ENSECAT00000009211.3
    Conserved Domains (1) summary
    pfam05536
    Location:30 → 637
    Neurochondrin; Neurochondrin

  3. XM_005607211.3 → XP_005607268.1  neurochondrin isoform X2

    See identical proteins and their annotated locations for XP_005607268.1

    UniProtKB/TrEMBL
    A0A3Q2HRX0
    Conserved Domains (1) summary
    pfam05536
    Location:13 → 620
    Neurochondrin

  4. XM_005607209.3 → XP_005607266.1  neurochondrin isoform X2

    See identical proteins and their annotated locations for XP_005607266.1

    UniProtKB/TrEMBL
    A0A3Q2HRX0
    Related
    ENSECAP00000037704.2, ENSECAT00000062290.3
    Conserved Domains (1) summary
    pfam05536
    Location:13 → 620
    Neurochondrin

  5. XM_023633599.1 → XP_023489367.1  neurochondrin isoform X2

    UniProtKB/TrEMBL
    A0A3Q2HRX0
    Conserved Domains (1) summary
    pfam05536
    Location:13 → 620
    Neurochondrin

  6. XM_023633593.1 → XP_023489361.1  neurochondrin isoform X2

    UniProtKB/TrEMBL
    A0A3Q2HRX0
    Conserved Domains (1) summary
    pfam05536
    Location:13 → 620
    Neurochondrin

  7. XM_023633585.1 → XP_023489353.1  neurochondrin isoform X2

    UniProtKB/TrEMBL
    A0A3Q2HRX0
    Conserved Domains (1) summary
    pfam05536
    Location:13 → 620
    Neurochondrin
Nucleotide Protein
Heading Accession and Version

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