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CHML CHM like Rab escort protein [ Equus caballus (horse) ]

Gene ID: 100054779, updated on 17-Aug-2024

Summary

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Official Symbol
CHMLprovided by VGNC
Official Full Name
CHM like Rab escort proteinprovided by VGNC
Primary source
VGNC:VGNC:16504
See related
Ensembl:ENSECAG00000049917
Gene type
protein coding
RefSeq status
INFERRED
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CHML in Genome Data Viewer
Location:
chromosome: 30
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 30 NC_009173.3 (3344763..3346724)

Chromosome 30 - NC_009173.3Genomic Context describing neighboring genes Neighboring gene exonuclease 1 Neighboring gene WD repeat domain 64 Neighboring gene opsin 3 Neighboring gene uncharacterized LOC111771326 Neighboring gene uncharacterized LOC111771325 Neighboring gene kynurenine 3-monooxygenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009173.3 Chromosome 30 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP-dissociation inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein geranylgeranylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in small GTPase-mediated signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Rab-protein geranylgeranyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rab proteins geranylgeranyltransferase component A 2
Names
CHM like Rab escort protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256975.1 → NP_001243904.1  rab proteins geranylgeranyltransferase component A 2

    See identical proteins and their annotated locations for NP_001243904.1

    Status: INFERRED

    Source sequence(s)
    PJAA01000031
    UniProtKB/TrEMBL
    A0A9L0S7I9
    Related
    ENSECAP00000063451.1, ENSECAT00000138412.1
    Conserved Domains (1) summary
    cl21454
    Location:6 → 532
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009173.3 Reference EquCab3.0 Primary Assembly

    Range
    3344763..3346724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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