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CD1D CD1d molecule [ Equus caballus (horse) ]

Gene ID: 100054770, updated on 15-Aug-2024

Summary

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Gene symbol
CD1D
Gene description
CD1d molecule
See related
Ensembl:ENSECAG00000012326
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
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Genomic context

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See CD1D in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 5 NC_009148.3 (36115340..36118581, complement)

Chromosome 5 - NC_009148.3Genomic Context describing neighboring genes Neighboring gene deoxycytidylate deaminase pseudogene Neighboring gene CD1a1 molecule Neighboring gene kirre like nephrin family adhesion molecule 1 Neighboring gene uncharacterized LOC111773391

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009148.3 Chromosome 5 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional CD1d and/or NKT cell invariant chain transcript in horse, pig, African elephant and guinea pig, but not in ruminants. Looringh van Beeck FA, et al. Mol Immunol, 2009 Apr. PMID 19185921, Free PMC Article
  2. The equine CD1 gene family is the largest and most diverse yet identified. Dossa RG, et al. Immunogenetics, 2014 Jan. PMID 24196432
  3. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endogenous lipid antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables exogenous lipid antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation, endogenous lipid antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in antigen processing and presentation, exogenous lipid antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell mediated cytotoxicity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
antigen-presenting glycoprotein CD1d
Names
CD1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001159692.1 → NP_001153164.1  antigen-presenting glycoprotein CD1d precursor

    See identical proteins and their annotated locations for NP_001153164.1

    Status: PROVISIONAL

    Source sequence(s)
    FJ028654
    UniProtKB/TrEMBL
    C1IYH5, G3FNZ8
    Related
    ENSECAP00000010324.3, ENSECAT00000013048.4
    Conserved Domains (2) summary
    cd07698
    Location:203 → 296
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam16497
    Location:19 → 198
    MHC_I_3; MHC-I family domain

RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009148.3 Reference EquCab3.0 Primary Assembly

    Range
    36115340..36118581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023640254.1 → XP_023496022.1  antigen-presenting glycoprotein CD1d isoform X1

    UniProtKB/TrEMBL
    A0A9L0S2F6
    Conserved Domains (2) summary
    cd07698
    Location:203 → 295
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam16497
    Location:19 → 198
    MHC_I_3; MHC-I family domain
Nucleotide Protein
Heading Accession and Version

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