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CHODL chondrolectin [ Equus caballus (horse) ]

Gene ID: 100053952, updated on 17-Aug-2024

Summary

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Official Symbol
CHODLprovided by VGNC
Official Full Name
chondrolectinprovided by VGNC
Primary source
VGNC:VGNC:16511
See related
Ensembl:ENSECAG00000009963
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CHODL in Genome Data Viewer
Location:
chromosome: 26
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 26 NC_009169.3 (17440287..17462511)

Chromosome 26 - NC_009169.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111770761 Neighboring gene uncharacterized LOC102148285 Neighboring gene transmembrane serine protease 15 Neighboring gene uncharacterized LOC100629503

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009169.3 Chromosome 26 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondrolectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009169.3 Reference EquCab3.0 Primary Assembly

    Range
    17440287..17462511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001500304.6 → XP_001500354.1  chondrolectin

    See identical proteins and their annotated locations for XP_001500354.1

    UniProtKB/TrEMBL
    F7BDA1
    Related
    ENSECAP00000007913.1, ENSECAT00000010272.3
    Conserved Domains (1) summary
    cl02432
    Location:28 → 180
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials