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CLEC1B C-type lectin domain family 1 member B [ Equus caballus (horse) ]

Gene ID: 100053758, updated on 17-Aug-2024

Summary

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Official Symbol
CLEC1Bprovided by VGNC
Official Full Name
C-type lectin domain family 1 member Bprovided by VGNC
Primary source
VGNC:VGNC:16601
See related
Ensembl:ENSECAG00000003385
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CLEC1B in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 6 NC_009149.3 (38155022..38162373)

Chromosome 6 - NC_009149.3Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 2 member A Neighboring gene C-type lectin domain family 12 member A Neighboring gene C-type lectin domain family 12 member B Neighboring gene C-type lectin domain containing 9A Neighboring gene C-type lectin domain family 1 member A Neighboring gene C-type lectin domain containing 7A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009149.3 Chromosome 6 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in platelet formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 1 member B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009149.3 Reference EquCab3.0 Primary Assembly

    Range
    38155022..38162373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005610928.3 → XP_005610985.1  C-type lectin domain family 1 member B

    UniProtKB/TrEMBL
    F6XNU6
    Related
    ENSECAP00000002429.1, ENSECAT00000003427.4
    Conserved Domains (2) summary
    cd03593
    Location:101 → 217
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    cl00867
    Location:22 → 60
    Bac_export_3; Bacterial export proteins, family 3
Nucleotide Protein
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