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B4GALNT1 beta-1,4-N-acetyl-galactosaminyltransferase 1 [ Equus caballus (horse) ]

Gene ID: 100053616, updated on 17-Aug-2024

Summary

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Official Symbol
B4GALNT1provided by VGNC
Official Full Name
beta-1,4-N-acetyl-galactosaminyltransferase 1provided by VGNC
Primary source
VGNC:VGNC:58495
See related
Ensembl:ENSECAG00000021591
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See B4GALNT1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 6 NC_009149.3 (76120096..76127838, complement)

Chromosome 6 - NC_009149.3Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 25 Neighboring gene solute carrier family 26 member 10 Neighboring gene 60S ribosomal protein L17 pseudogene Neighboring gene uncharacterized LOC111774010 Neighboring gene OS9 endoplasmic reticulum lectin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009149.3 Chromosome 6 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009149.3 Reference EquCab3.0 Primary Assembly

    Range
    76120096..76127838 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023643890.1 → XP_023499658.1  beta-1,4 N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A3Q2GXU4, A0A3Q2IF21
    Related
    ENSECAP00000025763.1, ENSECAT00000043204.3
    Conserved Domains (1) summary
    pfam00535
    Location:283 → 432
    Glycos_transf_2; Glycosyl transferase family 2

  2. XM_023643889.1 → XP_023499657.1  beta-1,4 N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A3Q2GXU4, A0A3Q2IF21
    Conserved Domains (1) summary
    pfam00535
    Location:283 → 432
    Glycos_transf_2; Glycosyl transferase family 2

  3. XM_023643888.1 → XP_023499656.1  beta-1,4 N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A3Q2GXU4, A0A3Q2IF21
    Related
    ENSECAP00000044332.2, ENSECAT00000047515.3
    Conserved Domains (1) summary
    pfam00535
    Location:283 → 432
    Glycos_transf_2; Glycosyl transferase family 2
Nucleotide Protein
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