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APCS amyloid P component, serum [ Equus caballus (horse) ]

Gene ID: 100053475, updated on 17-Aug-2024

Summary

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Official Symbol
APCSprovided by VGNC
Official Full Name
amyloid P component, serumprovided by VGNC
Primary source
VGNC:VGNC:15402
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See APCS in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 5 NC_009148.3 (34297965..34299065, complement)

Chromosome 5 - NC_009148.3Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase 23 Neighboring gene C-reactive protein Neighboring gene olfactory receptor family 10 subfamily J member 31, pseudogene Neighboring gene olfactory receptor family 10 subfamily J member 5 Neighboring gene olfactory receptor family 10 subfamily J member 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009148.3 Chromosome 5 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables complement component C1q complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serum amyloid P-component

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009148.3 Reference EquCab3.0 Primary Assembly

    Range
    34297965..34299065 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001504400.4 → XP_001504450.1  serum amyloid P-component

    UniProtKB/TrEMBL
    F7C349
    Conserved Domains (1) summary
    pfam00354
    Location:26 → 219
    Pentaxin; Pentaxin family
Nucleotide Protein
Heading Accession and Version

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