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ITGB8 integrin subunit beta 8 [ Equus caballus (horse) ]

Gene ID: 100053462, updated on 17-Aug-2024

Summary

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Official Symbol
ITGB8provided by VGNC
Official Full Name
integrin subunit beta 8provided by VGNC
Primary source
VGNC:VGNC:19182
See related
Ensembl:ENSECAG00000019215
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See ITGB8 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 4 NC_009147.3 (52390366..52469438)

Chromosome 4 - NC_009147.3Genomic Context describing neighboring genes Neighboring gene MET transcriptional regulator MACC1 Neighboring gene 60S ribosomal protein L6 pseudogene Neighboring gene 60S ribosomal protein L31 pseudogene Neighboring gene uncharacterized LOC111773186 Neighboring gene uncharacterized LOC111773187 Neighboring gene uncharacterized LOC111773188

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009147.3 Chromosome 4 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin beta-8
Names
integrin, beta 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009147.3 Reference EquCab3.0 Primary Assembly

    Range
    52390366..52469438
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001497221.5 → XP_001497271.1  integrin beta-8

    See identical proteins and their annotated locations for XP_001497271.1

    UniProtKB/TrEMBL
    A0A9L0TBQ3
    Related
    ENSECAP00000084536.1, ENSECAT00000108985.1
    Conserved Domains (1) summary
    smart00187
    Location:54 → 468
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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