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SSB small RNA binding exonuclease protection factor La [ Equus caballus (horse) ]

Gene ID: 100052752, updated on 17-Aug-2024

Summary

Official Symbol
SSBprovided by VGNC
Official Full Name
small RNA binding exonuclease protection factor Laprovided by VGNC
Primary source
VGNC:VGNC:58550
See related
Ensembl:ENSECAG00000018495
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
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Genomic context

See SSB in Genome Data Viewer
Location:
chromosome: 18
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 18 NC_009161.3 (49356712..49366717)

Chromosome 18 - NC_009161.3Genomic Context describing neighboring genes Neighboring gene kelch like family member 23 Neighboring gene uncharacterized LOC102151046 Neighboring gene uncharacterized LOC111768922 Neighboring gene methyltransferase 5, N6-adenosine Neighboring gene ubiquitin protein ligase E3 component n-recognin 3

Genomic regions, transcripts, and products

Genomic Sequence:
NC_009161.3 Chromosome 18 Reference EquCab3.0 Primary Assembly

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in tRNA processing IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
lupus La protein
Names
Sjogren syndrome antigen B (autoantigen La)
lupus La protein-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001309185.1NP_001296114.1  lupus La protein

    See identical proteins and their annotated locations for NP_001296114.1

    Status: VALIDATED

    Source sequence(s)
    CD528619, CD528703, CX600248, DN505835, JL616528, PJAA01000019
    UniProtKB/TrEMBL
    A0A3Q2LRH9, A0A9L0RDI7
    Related
    ENSECAP00000071030.1, ENSECAT00000130399.1
    Conserved Domains (3) summary
    cd08028
    Location:1091
    LARP_3; La RNA-binding domain of La-related protein 3
    cd12291
    Location:112183
    RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins
    pfam08777
    Location:231334
    RRM_3; RNA binding motif

RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009161.3 Reference EquCab3.0 Primary Assembly

    Range
    49356712..49366717
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)