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TTC21B tetratricopeptide repeat domain 21B [ Equus caballus (horse) ]

Gene ID: 100052001, updated on 17-Aug-2024

Summary

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Official Symbol
TTC21Bprovided by VGNC
Official Full Name
tetratricopeptide repeat domain 21Bprovided by VGNC
Primary source
VGNC:VGNC:24615
See related
Ensembl:ENSECAG00000019898
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See TTC21B in Genome Data Viewer
Location:
chromosome: 18
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 18 NC_009161.3 (45971125..46051485, complement)

Chromosome 18 - NC_009161.3Genomic Context describing neighboring genes Neighboring gene cysteine and serine rich nuclear protein 3 Neighboring gene translation initiation factor IF-2 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 3 Neighboring gene sodium voltage-gated channel alpha subunit 1 Neighboring gene uncharacterized LOC111768915 Neighboring gene sodium voltage-gated channel alpha subunit 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009161.3 Chromosome 18 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intraciliary retrograde transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of intraciliary transport particle A IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 21B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009161.3 Reference EquCab3.0 Primary Assembly

    Range
    45971125..46051485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023623067.1 → XP_023478835.1  tetratricopeptide repeat protein 21B isoform X1

    UniProtKB/TrEMBL
    A0A3Q2I0E6
    Related
    ENSECAP00000017822.2, ENSECAT00000021630.4
    Conserved Domains (2) summary
    sd00006
    Location:722 → 750
    TPR; TPR repeat [structural motif]
    cl26002
    Location:88 → 884
    TPR_11; TPR repeat

  2. XM_023623068.1 → XP_023478836.1  tetratricopeptide repeat protein 21B isoform X2

    UniProtKB/TrEMBL
    A0A3Q2I0E6, A0A9L0T1A3
    Related
    ENSECAP00000080036.1, ENSECAT00000111608.1
    Conserved Domains (3) summary
    sd00006
    Location:722 → 750
    TPR; TPR repeat [structural motif]
    cl26002
    Location:313 → 1049
    TPR_11; TPR repeat
    cl26005
    Location:110 → 396
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional

RNA

  1. XR_002801596.1 RNA Sequence

    Related
    ENSECAT00000033862.2
Nucleotide Protein
Heading Accession and Version

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