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CNOT10 CCR4-NOT transcription complex subunit 10 [ Equus caballus (horse) ]

Gene ID: 100050817, updated on 17-Aug-2024

Summary

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Official Symbol
CNOT10provided by VGNC
Official Full Name
CCR4-NOT transcription complex subunit 10provided by VGNC
Primary source
VGNC:VGNC:16674
See related
Ensembl:ENSECAG00000021306
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CNOT10 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 16 NC_009159.3 (53060179..53137842, complement)

Chromosome 16 - NC_009159.3Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 71 Neighboring gene uncharacterized LOC111768389 Neighboring gene uncharacterized LOC111768390 Neighboring gene ubiquitin-conjugating enzyme E2 N-like Neighboring gene dynein cytoplasmic 1 light intermediate chain 1 Neighboring gene CKLF like MARVEL transmembrane domain containing 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009159.3 Chromosome 16 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009159.3 Reference EquCab3.0 Primary Assembly

    Range
    53060179..53137842 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001491223.4 → XP_001491273.1  CCR4-NOT transcription complex subunit 10 isoform X3

    UniProtKB/TrEMBL
    A0A5F5PYS9
    Related
    ENSECAP00000053793.1, ENSECAT00000067281.2
    Conserved Domains (2) summary
    COG0457
    Location:28 → 274
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:296 → 321
    TPR; TPR repeat [structural motif]

  2. XM_005600865.3 → XP_005600922.1  CCR4-NOT transcription complex subunit 10 isoform X2

    UniProtKB/TrEMBL
    A0A5F5PYS9
    Conserved Domains (2) summary
    COG0457
    Location:88 → 334
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:356 → 381
    TPR; TPR repeat [structural motif]

  3. XM_003363145.4 → XP_003363193.1  CCR4-NOT transcription complex subunit 10 isoform X1

    UniProtKB/TrEMBL
    A0A5F5PYS9, F6YT67
    Related
    ENSECAP00000019181.2, ENSECAT00000023176.4
    Conserved Domains (2) summary
    COG0457
    Location:88 → 334
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:356 → 381
    TPR; TPR repeat [structural motif]

RNA

  1. XR_288566.3 RNA Sequence

Nucleotide Protein
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