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TBC1D16 TBC1 domain family member 16 [ Equus caballus (horse) ]

Gene ID: 100050342, updated on 17-Aug-2024

Summary

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Official Symbol
TBC1D16provided by VGNC
Official Full Name
TBC1 domain family member 16provided by VGNC
Primary source
VGNC:VGNC:110539
See related
Ensembl:ENSECAG00000018094
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See TBC1D16 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 11 NC_009154.3 (2894521..2977009)

Chromosome 11 - NC_009154.3Genomic Context describing neighboring genes Neighboring gene alpha glucosidase Neighboring gene coiled-coil domain 40 molecular ruler complex subunit Neighboring gene uncharacterized LOC111775574 Neighboring gene translation initiation factor IF-2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009154.3 Chromosome 11 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TBC1 domain family member 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009154.3 Reference EquCab3.0 Primary Assembly

    Range
    2894521..2977009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023651870.1 → XP_023507638.1  TBC1 domain family member 16 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2HM73, A0A3Q2IBK7
    Conserved Domains (1) summary
    smart00164
    Location:424 → 652
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  2. XM_023651867.1 → XP_023507635.1  TBC1 domain family member 16 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2HM73, A0A3Q2IBK7
    Related
    ENSECAP00000044994.3, ENSECAT00000058488.3
    Conserved Domains (1) summary
    smart00164
    Location:424 → 652
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  3. XM_023651874.1 → XP_023507642.1  TBC1 domain family member 16 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2HM73
    Conserved Domains (1) summary
    smart00164
    Location:423 → 651
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  4. XM_023651873.1 → XP_023507641.1  TBC1 domain family member 16 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2HM73
    Related
    ENSECAP00000051562.2, ENSECAT00000072158.2
    Conserved Domains (2) summary
    smart00164
    Location:423 → 651
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    pfam12068
    Location:245 → 359
    DUF3548; Domain of unknown function (DUF3548)

  5. XM_023651876.1 → XP_023507644.1  TBC1 domain family member 16 isoform X4

    UniProtKB/TrEMBL
    A0A3Q2HM73
    Conserved Domains (2) summary
    smart00164
    Location:422 → 650
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    pfam12068
    Location:245 → 359
    DUF3548; Domain of unknown function (DUF3548)

  6. XM_023651877.1 → XP_023507645.1  TBC1 domain family member 16 isoform X5

    UniProtKB/TrEMBL
    A0A3Q2GZH2
    Related
    ENSECAP00000026061.1, ENSECAT00000038639.2
    Conserved Domains (1) summary
    smart00164
    Location:424 → 634
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  7. XM_023651878.1 → XP_023507646.1  TBC1 domain family member 16 isoform X6

    UniProtKB/TrEMBL
    A0A3Q2GZH2
    Conserved Domains (1) summary
    smart00164
    Location:424 → 634
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  8. XM_023651871.1 → XP_023507639.1  TBC1 domain family member 16 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2HM73, A0A3Q2IBK7
    Conserved Domains (1) summary
    smart00164
    Location:424 → 652
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  9. XM_023651868.1 → XP_023507636.1  TBC1 domain family member 16 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2HM73, A0A3Q2IBK7
    Conserved Domains (1) summary
    smart00164
    Location:424 → 652
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  10. XM_023651872.1 → XP_023507640.1  TBC1 domain family member 16 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2HM73, A0A3Q2IBK7
    Conserved Domains (1) summary
    smart00164
    Location:424 → 652
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
Nucleotide Protein
Heading Accession and Version

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