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CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 [ Equus caballus (horse) ]

Gene ID: 100050200, updated on 17-Aug-2024

Summary

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Official Symbol
CSGALNACT2provided by VGNC
Official Full Name
chondroitin sulfate N-acetylgalactosaminyltransferase 2provided by VGNC
Primary source
VGNC:VGNC:16901
See related
Ensembl:ENSECAG00000016078
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CSGALNACT2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 1 NC_009144.3 (71543973..71585337, complement)

Chromosome 1 - NC_009144.3Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein F Neighboring gene FXYD domain containing ion transport regulator 4 Neighboring gene RasGEF domain family member 1A Neighboring gene microRNA mir-9044 Neighboring gene ret proto-oncogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009144.3 Chromosome 1 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009144.3 Reference EquCab3.0 Primary Assembly

    Range
    71543973..71585337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023646695.1 → XP_023502463.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A9L0R943, A0A9L0RNZ7
    Related
    ENSECAP00000063547.1, ENSECAT00000127987.1
    Conserved Domains (1) summary
    cl11394
    Location:140 → 516
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_023646702.1 → XP_023502470.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    F6V0F7
    Related
    ENSECAP00000013782.2, ENSECAT00000017017.3
    Conserved Domains (1) summary
    cl11394
    Location:140 → 327
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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