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CNTN2 contactin 2 [ Equus caballus (horse) ]

Gene ID: 100050179, updated on 17-Aug-2024

Summary

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Official Symbol
CNTN2provided by VGNC
Official Full Name
contactin 2provided by VGNC
Primary source
VGNC:VGNC:16696
See related
Ensembl:ENSECAG00000017600
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CNTN2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 5 NC_009148.3 (1565091..1597060)

Chromosome 5 - NC_009148.3Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene neurofascin Neighboring gene uncharacterized LOC106783131 Neighboring gene transmembrane protein 81 Neighboring gene RB binding protein 5, histone lysine methyltransferase complex subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009148.3 Chromosome 5 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009148.3 Reference EquCab3.0 Primary Assembly

    Range
    1565091..1597060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023640385.1 → XP_023496153.1  contactin-2 isoform X1

    UniProtKB/TrEMBL
    A0A9L0RHA5
    Related
    ENSECAP00000061056.1, ENSECAT00000095547.1
    Conserved Domains (5) summary
    cd05727
    Location:161 → 258
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd00063
    Location:846 → 937
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd04968
    Location:269 → 354
    Ig3_Contactin; Third immunoglobulin (Ig) domain of contactin
    cd04969
    Location:463 → 535
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:66 → 159
    Ig; Immunoglobulin domain

  2. XM_023640386.1 → XP_023496154.1  contactin-2 isoform X2

    UniProtKB/TrEMBL
    A0A9L0TDB3, F7AA23
    Related
    ENSECAP00000016418.2, ENSECAT00000020020.4
    Conserved Domains (5) summary
    cd05727
    Location:131 → 228
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd00063
    Location:816 → 907
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd04968
    Location:239 → 324
    Ig3_Contactin; Third immunoglobulin (Ig) domain of contactin
    cd04969
    Location:433 → 505
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:36 → 129
    Ig; Immunoglobulin domain

  3. XM_023640387.1 → XP_023496155.1  contactin-2 isoform X2

    UniProtKB/TrEMBL
    A0A9L0TDB3, F7AA23
    Conserved Domains (5) summary
    cd05727
    Location:131 → 228
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd00063
    Location:816 → 907
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd04968
    Location:239 → 324
    Ig3_Contactin; Third immunoglobulin (Ig) domain of contactin
    cd04969
    Location:433 → 505
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:36 → 129
    Ig; Immunoglobulin domain
Nucleotide Protein
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