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XB5895996.L provisional ortholog of carbonyl reductase 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100049750, updated on 17-Aug-2024

Summary

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Symbol
XB5895996.L
Full Name
provisional ortholog of carbonyl reductase 1 L homeolog
Primary source
Xenbase:XB-GENE-5896279
Locus tag
XELAEV_18002492mg
See related
EnsemblRapid:ENSXLAG00005005835
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
LOC100490956.L
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Genomic context

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Location:
chromosome: 3L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (6651769..6661745, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694822.1 (1719401..1730095, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene PR domain 4 L homeolog Neighboring gene aldo-keto reductase family 1, member B1 (aldose reductase) L homeolog Neighboring gene aldo-keto reductase family 1, member C2 L homeolog Neighboring gene aldo-keto reductase family 1 member C15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC100049750
Names
prostaglandin-E(2) 9-reductase-like L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098690.1 → NP_001092160.1  uncharacterized protein LOC100049750

    See identical proteins and their annotated locations for NP_001092160.1

    Status: PREDICTED

    Source sequence(s)
    BC141737
    UniProtKB/TrEMBL
    A5D8M7
    Related
    ENSXLAP00005017372.1, ENSXLAT00005017668.1
    Conserved Domains (2) summary
    COG0656
    Location:9 → 314
    ARA1; Aldo/keto reductase, related to diketogulonate reductase [Secondary metabolites biosynthesis, transport and catabolism]
    COG0667
    Location:18 → 297
    Tas; Predicted oxidoreductase (related to aryl-alcohol dehydrogenase) [General function prediction only]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    6651769..6661745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018240834.2 → XP_018096323.1  uncharacterized protein LOC100049750 isoform X1

    UniProtKB/TrEMBL
    A0A8J0U520
Nucleotide Protein Strain
Heading Accession and Version

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